I finally got round to moving all my web services off a single server and onto a new server using ESXi virtualisation. I got an older HP G7 DL380 with 2x Intel Xeon CPU’s and 64GB of RAM for around £300 off eBay. It does use more power (Averages 150W) however it is well worth it as it provides full RAID redundancy and virtualisation provides easy backup/snapshots before any modifications. I have decided to create a separate VM for each service and then use NGINX as a reverse proxy to handle all the SSL. This greatly reduces management overhead as I have only got to renew the certificates in one place, it also provides speed improvements as well as security.
I was initially put off LetsEncrypt with its short certificate lifetime and the need for automation, especially when I add a large and complex Apache configuration file however I decided to go for it with a brand new VM and I am glad I did; it is brilliant!!